Variant report

Variant	rs3091434
Chromosome Location	chr20:41328521-41328522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11086848	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12479621	0.94[CHB][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12624619	0.87[EUR][1000 genomes]
rs12625206	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13038370	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13042288	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13043908	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13044387	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16987210	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16987212	0.88[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2206428	1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2206431	0.80[EUR][1000 genomes]
rs2425515	1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2425520	0.89[GIH][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2425536	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2867491	0.85[CEU][hapmap];0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs2867493	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2867494	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3091578	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3091989	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs3092078	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3092270	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3092557	0.93[JPT][hapmap]
rs3092592	0.94[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3092656	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs3092743	0.83[ASW][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.90[ASN][1000 genomes]
rs34079161	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36020805	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41283264	0.93[ASN][1000 genomes]
rs4810363	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4810364	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4810365	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4810366	0.89[GIH][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4810367	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4812621	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812622	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4812623	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812624	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812625	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812626	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812628	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4812629	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4812630	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812631	0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4812632	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55796409	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60275164	0.90[ASN][1000 genomes]
rs6065522	0.82[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6065523	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6065524	0.88[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6065525	1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6065527	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6072817	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6072818	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6072823	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6072824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6072826	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6072829	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6072833	0.89[GIH][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62205374	0.90[ASN][1000 genomes]
rs62205376	0.91[ASN][1000 genomes]
rs62205381	0.87[ASN][1000 genomes]
rs62205382	0.87[ASN][1000 genomes]
rs73112427	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs742420	0.95[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532517	chr20:41188651-41342196	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv949644	chr20:41207365-41333541	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv912878	chr20:41222480-41361424	Strong transcription Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv833988	chr20:41227788-41379921	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv586028	chr20:41296994-41381215	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1060878	chr20:41317182-41342290	Weak transcription Strong transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41319600-41329200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41327600-41330400	Weak transcription	Liver	Liver

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