Variant report

Variant	rs3092656
Chromosome Location	chr20:41312568-41312569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12479621	0.87[JPT][hapmap]
rs12625206	0.88[JPT][hapmap]
rs16987210	0.88[JPT][hapmap]
rs16987212	0.87[JPT][hapmap]
rs2206427	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2206428	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2206429	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2223540	0.85[ASN][1000 genomes]
rs2425509	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2425512	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2425513	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2425515	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2425516	0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2425524	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2425536	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2425537	0.86[EUR][1000 genomes]
rs3091434	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs3091699	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3092136	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3092557	0.81[JPT][hapmap]
rs3092592	0.87[JPT][hapmap]
rs3092743	0.87[JPT][hapmap]
rs4812613	0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6016864	0.96[EUR][1000 genomes]
rs6030406	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6065522	0.87[JPT][hapmap]
rs6065523	0.81[JPT][hapmap]
rs6065524	0.87[JPT][hapmap]
rs6065525	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs6072818	0.88[JPT][hapmap]
rs6072819	0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6072823	0.88[JPT][hapmap]
rs6072824	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs6072826	0.88[JPT][hapmap]
rs6072829	0.88[JPT][hapmap]
rs6102976	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6102985	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6102992	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs926482	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532517	chr20:41188651-41342196	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv949644	chr20:41207365-41333541	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv912878	chr20:41222480-41361424	Strong transcription Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv833988	chr20:41227788-41379921	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv586028	chr20:41296994-41381215	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41306600-41313000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:41306800-41314000	Weak transcription	Pancreas	Pancrea
3	chr20:41310800-41312600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr20:41311800-41318200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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