Variant report

Variant	rs3094134
Chromosome Location	chr6:30122154-30122155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30120236..30122567-chr6:30123683..30125574,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3094068	0.81[EUR][1000 genomes]
rs3094081	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094677	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3129838	0.81[AMR][1000 genomes]
rs9261538	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3094134	HCG22	cis	lymphoblastoid	seeQTL
rs3094134	ZKSCAN3	cis	cerebellum	SCAN
rs3094134	HIST1H2AK	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30118400-30122200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:30118600-30125000	Enhancers	Fetal Intestine Large	intestine
3	chr6:30119200-30122400	Weak transcription	HSMM	muscle
4	chr6:30119600-30122400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:30119600-30124000	Weak transcription	Right Atrium	heart
6	chr6:30119800-30122400	Enhancers	HepG2	liver
7	chr6:30120200-30122200	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:30120600-30123800	Weak transcription	K562	blood
9	chr6:30121000-30122800	Enhancers	Small Intestine	intestine
10	chr6:30121000-30128200	Weak transcription	Lung	lung
11	chr6:30121400-30122200	Genic enhancers	Fetal Intestine Small	intestine
12	chr6:30121600-30122200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr6:30121600-30122800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:30121600-30123600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:30121600-30125600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:30121800-30122200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:30121800-30122400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:30121800-30122600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:30121800-30122800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:30121800-30123600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:30121800-30124000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:30121800-30125000	Enhancers	HMEC	breast
23	chr6:30122000-30122200	Flanking Active TSS	Colonic Mucosa	Colon
24	chr6:30122000-30122200	Bivalent Enhancer	NHEK	skin
25	chr6:30122000-30122400	Enhancers	NHDF-Ad	bronchial
26	chr6:30122000-30122400	Enhancers	Osteobl	bone
27	chr6:30122000-30123600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:30122000-30123600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:30122000-30123800	Enhancers	NH-A	brain
30	chr6:30122000-30124800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:30122000-30124800	Enhancers	A549	lung
32	chr6:30122000-30125000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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