Variant report

Variant	rs3094081
Chromosome Location	chr6:30241492-30241493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs3094065	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3094068	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3094079	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3094134	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094618	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094631	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3094677	0.85[EUR][1000 genomes]
rs3129834	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3129838	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3130397	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3131110	0.84[EUR][1000 genomes]
rs9261538	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261588	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884061	chr6:30234627-30250450	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30233200-30243600	Weak transcription	HSMMtube	muscle
2	chr6:30237200-30243400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:30241200-30241800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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