Variant report

Variant	rs3129834
Chromosome Location	chr6:30267372-30267373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30267119-30267626	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:30266983-30268903	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:30264983..30267721-chr6:30268532..30272328,6	K562	blood:
2	chr6:30267234..30270116-chr6:30270396..30272673,2	K562	blood:
3	chr6:30265309..30267801-chr6:30272366..30276309,4	K562	blood:

Variant related genes	Relation type
HCG18	TF binding region
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs3094065	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094068	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094079	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094081	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3094618	0.81[EUR][1000 genomes]
rs3094631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129838	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3132675	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4959045	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261494	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261547	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261588	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30256000-30270200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
3	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
4	chr6:30259000-30287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:30261800-30270000	Weak transcription	NHDF-Ad	bronchial
6	chr6:30262200-30270200	Weak transcription	Fetal Brain Male	brain
7	chr6:30262600-30269200	Weak transcription	Hela-S3	cervix
8	chr6:30262600-30270200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:30262600-30270200	Weak transcription	Colonic Mucosa	Colon
10	chr6:30262600-30270200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:30262600-30270400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:30262600-30271800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:30262600-30271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:30262600-30279200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:30262600-30279600	Weak transcription	Small Intestine	intestine
16	chr6:30262600-30292400	Weak transcription	Pancreas	Pancrea
17	chr6:30262800-30269400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:30262800-30280200	Weak transcription	HUVEC	blood vessel
19	chr6:30262800-30280400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:30262800-30283200	Weak transcription	NHLF	lung
21	chr6:30262800-30290200	Weak transcription	Spleen	Spleen
22	chr6:30263000-30269000	Weak transcription	HSMM	muscle
23	chr6:30263000-30270200	Weak transcription	Fetal Lung	lung
24	chr6:30263000-30271400	Weak transcription	Osteobl	bone
25	chr6:30263000-30277200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:30263000-30280000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:30263000-30281400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:30263000-30282000	Weak transcription	Psoas Muscle	Psoas
29	chr6:30263000-30293000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:30263200-30268800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:30263200-30268800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:30263200-30269800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:30263200-30270200	Weak transcription	Esophagus	oesophagus
34	chr6:30263200-30271600	Weak transcription	Thymus	Thymus
35	chr6:30263200-30280200	Weak transcription	HSMMtube	muscle
36	chr6:30263200-30280600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:30263200-30281600	Weak transcription	Right Ventricle	heart
38	chr6:30263400-30270200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:30263400-30270200	Weak transcription	Left Ventricle	heart
40	chr6:30263600-30268800	Weak transcription	Brain Germinal Matrix	brain
41	chr6:30263600-30270000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:30263600-30270200	Weak transcription	HMEC	breast
43	chr6:30263800-30269000	Weak transcription	Primary B cells from cord blood	blood
44	chr6:30263800-30269400	Weak transcription	A549	lung
45	chr6:30263800-30269800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:30263800-30269800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:30263800-30270200	Weak transcription	GM12878-XiMat	blood
48	chr6:30263800-30271800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:30263800-30280800	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:30264000-30267400	Weak transcription	Primary monocytes fromperipheralblood	blood

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