Variant report

Variant	rs9261494
Chromosome Location	chr6:30110524-30110525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2240069	0.82[EUR][1000 genomes]
rs3094065	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3094068	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3094079	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3094631	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3129834	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3130397	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132122	0.82[EUR][1000 genomes]
rs3132123	0.82[EUR][1000 genomes]
rs3132675	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132676	1.00[ASN][1000 genomes]
rs3132678	0.82[EUR][1000 genomes]
rs3132679	0.80[EUR][1000 genomes]
rs4959045	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7763159	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261402	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261547	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9261588	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs9261494	HLA-F	cis	multi-tissue	Pritchard
rs9261494	BTN3A3	cis	parietal	SCAN
rs9261494	HLA-DRB5	cis	multi-tissue	Pritchard
rs9261494	PRSS16	cis	parietal	SCAN
rs9261494	HCG22	cis	lymphoblastoid	seeQTL
rs9261494	HLA-H	cis	multi-tissue	Pritchard
rs9261494	HLA-A	cis	multi-tissue	Pritchard
rs9261494	ZKSCAN3	cis	cerebellum	SCAN
rs9261494	FLJ35429	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30105400-30111600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:30105400-30111800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:30107000-30111800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:30107600-30111400	Weak transcription	HepG2	liver
5	chr6:30109200-30111800	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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