Variant report

Variant	rs3094068
Chromosome Location	chr6:30252502-30252503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs3094065	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094079	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094081	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3094134	0.81[EUR][1000 genomes]
rs3094618	0.85[EUR][1000 genomes]
rs3094631	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129834	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129838	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130397	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3132675	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4959045	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261434	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9261494	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9261538	0.83[EUR][1000 genomes]
rs9261547	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261588	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247400-30253000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:30248400-30253400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:30248400-30255600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:30248600-30254000	ZNF genes & repeats	Liver	Liver
6	chr6:30250400-30252600	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr6:30250600-30252800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr6:30251200-30252600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
9	chr6:30251200-30253000	ZNF genes & repeats	Brain Hippocampus Middle	brain
10	chr6:30251600-30252800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr6:30252200-30262600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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