Variant report
| Variant | rs3100768 |
|---|---|
| Chromosome Location | chr11:18234712-18234713 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MRGPRX4-1 | chr11:18234628-18235486 | XLOC_009080 |
| 2 | lnc-MRGPRX4-1 | chr11:18234628-18235109 | XLOC_009080 |
| 3 | lnc-MRGPRX4-1 | chr11:18234628-18235111 | NR_026564 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs12577038 | 0.94[ASN][1000 genomes] |
| rs1378609 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap] |
| rs2445174 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2445175 | 1.00[CHB][hapmap];0.83[JPT][hapmap] |
| rs2445228 | 0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2460827 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2468789 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2468790 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs2956632 | 0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2956633 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2956634 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4150577 | 1.00[MEX][hapmap] |
| rs55943578 | 0.89[ASN][1000 genomes] |
| rs56149966 | 0.80[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7927495 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv428569 | chr11:18194030-18350869 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv975156 | chr11:18230807-18245674 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
