Variant report

Variant	rs3105189
Chromosome Location	chr8:100430977-100430978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1039448	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10955207	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955208	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955213	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10955214	0.93[CEU][hapmap]
rs10955215	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11986595	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12234903	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12542214	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12549477	0.93[CEU][hapmap]
rs12550617	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12676009	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12676915	0.93[CEU][hapmap]
rs12681244	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1388657	0.93[CEU][hapmap]
rs1487022	0.93[CEU][hapmap]
rs1545959	0.93[CEU][hapmap]
rs1565581	0.80[EUR][1000 genomes]
rs16897430	0.93[CEU][hapmap]
rs16897435	0.93[CEU][hapmap]
rs16897440	0.93[CEU][hapmap]
rs2029595	0.80[EUR][1000 genomes]
rs2029596	0.80[EUR][1000 genomes]
rs2046936	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3103102	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3103698	0.93[CEU][hapmap]
rs3103702	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3103708	0.81[EUR][1000 genomes]
rs3103713	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3103715	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3103716	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3103718	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3103719	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3103731	0.80[EUR][1000 genomes]
rs3103732	0.93[CEU][hapmap]
rs3105167	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3105178	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3105179	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3105180	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3105182	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3105183	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3105184	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3105188	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105196	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3105197	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3105200	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3105202	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110397	0.80[EUR][1000 genomes]
rs3110398	0.80[EUR][1000 genomes]
rs3110400	0.93[CEU][hapmap]
rs3110401	0.93[CEU][hapmap]
rs3110403	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs3110405	0.93[CEU][hapmap]
rs3110407	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110408	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134147	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134148	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134149	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134151	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134153	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3134154	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134157	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134159	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134160	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134165	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3134169	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3134170	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3134171	0.93[CEU][hapmap]
rs3134172	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134174	0.81[EUR][1000 genomes]
rs3134177	0.81[EUR][1000 genomes]
rs3134179	0.80[EUR][1000 genomes]
rs3134186	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134187	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134298	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3134299	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134301	0.93[CEU][hapmap]
rs3134302	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134304	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34237216	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4735615	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4735619	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4735620	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56174158	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56193096	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6468690	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6468691	0.93[CEU][hapmap]
rs6986467	0.93[CEU][hapmap]
rs717365	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72674642	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72674644	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72674651	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7840337	0.93[CEU][hapmap]
rs957539	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs965657	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531505	chr8:99932947-100464147	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv524617	chr8:100032844-100717925	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1020614	chr8:100046692-100594092	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1026442	chr8:100075230-100561451	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539694	chr8:100075230-100561451	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1022914	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv539695	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv611812	chr8:100232372-100464671	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1027031	chr8:100250184-100442195	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv539696	chr8:100250184-100442195	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv933677	chr8:100254133-100455039	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv831407	chr8:100284406-100448725	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1031100	chr8:100290887-100508952	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv539697	chr8:100290887-100508952	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv529685	chr8:100290888-100463947	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv891226	chr8:100295634-100708595	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
17	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
18	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
19	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
20	nsv1015966	chr8:100387076-100481107	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
22	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
23	nsv933879	chr8:100417371-100622310	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
24	nsv933968	chr8:100430594-100444177	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100384400-100437600	Weak transcription	Lung	lung
2	chr8:100393600-100445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:100395400-100432600	Weak transcription	Psoas Muscle	Psoas
4	chr8:100397800-100445000	Weak transcription	HSMM	muscle
5	chr8:100399800-100445400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:100399800-100498400	Weak transcription	Thymus	Thymus
7	chr8:100404400-100441800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:100404400-100444600	Weak transcription	Placenta	Placenta
9	chr8:100416200-100445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:100419600-100463600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr8:100420800-100431000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:100420800-100441800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:100421000-100448400	Weak transcription	NH-A	brain
14	chr8:100421600-100472800	Weak transcription	Aorta	Aorta
15	chr8:100421800-100444400	Weak transcription	NHDF-Ad	bronchial
16	chr8:100425000-100442200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:100425000-100443800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:100425200-100443400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:100426000-100466200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr8:100426200-100435800	Weak transcription	Small Intestine	intestine
21	chr8:100426200-100441800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr8:100427000-100444800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:100427200-100444400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:100427400-100444400	Weak transcription	Adipose Nuclei	Adipose
25	chr8:100427400-100445000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr8:100427800-100436600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr8:100427800-100441600	Weak transcription	Primary B cells from cord blood	blood
28	chr8:100427800-100444600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:100428000-100433800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:100428200-100431000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:100428200-100435000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr8:100428200-100444600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:100428400-100435200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr8:100428400-100444000	Weak transcription	Primary T cells from cord blood	blood
35	chr8:100428400-100445000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:100428600-100444600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:100428600-100456400	Weak transcription	Fetal Stomach	stomach
38	chr8:100428600-100466600	Weak transcription	Spleen	Spleen
39	chr8:100429000-100434000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:100429000-100437000	Weak transcription	Gastric	stomach
41	chr8:100429000-100443000	Weak transcription	Fetal Intestine Small	intestine
42	chr8:100429000-100445200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:100429200-100434000	Weak transcription	Left Ventricle	heart
44	chr8:100429200-100434200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:100429400-100445200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:100430000-100432000	Strong transcription	Primary hematopoietic stem cells	blood
47	chr8:100430400-100434000	Weak transcription	Fetal Heart	heart
48	chr8:100430400-100445200	Weak transcription	HSMMtube	muscle
49	chr8:100430600-100444400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:100430800-100431000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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