Variant report

Variant	rs3108142
Chromosome Location	chr4:107339716-107339717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13113961	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13148463	0.83[EUR][1000 genomes]
rs1522207	0.83[EUR][1000 genomes]
rs17355932	0.85[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2049209	0.84[EUR][1000 genomes]
rs2280631	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2691803	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3108141	0.93[AFR][1000 genomes]
rs3108144	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3108145	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4484374	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4495119	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4956257	0.87[ASN][1000 genomes]
rs6819528	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6850696	0.82[EUR][1000 genomes]
rs7673683	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7691063	0.83[EUR][1000 genomes]
rs940617	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107336200-107341600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:107339200-107340000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:107339200-107340400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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