Variant report
| Variant | rs13113961 |
|---|---|
| Chromosome Location | chr4:107378306-107378307 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AIMP1-1 | chr4:107378159-107378384 | XLOC_003636 |
| 2 | lnc-AIMP1-1 | chr4:107378159-107378384 | XLOC_003636 |
| 3 | lnc-AIMP1-1 | chr4:107378159-107378478 | XLOC_003636 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs17355932 | 0.93[CEU][hapmap];0.91[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2049209 | 0.81[ASN][1000 genomes] |
| rs2280631 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2691803 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3108142 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3108144 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3108145 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4413480 | 0.93[EUR][1000 genomes] |
| rs4484374 | 0.90[ASN][1000 genomes] |
| rs4495119 | 0.90[ASN][1000 genomes] |
| rs4956257 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6819528 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6825451 | 0.88[EUR][1000 genomes] |
| rs6850696 | 0.90[EUR][1000 genomes] |
| rs7673683 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs940617 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008963 | chr4:107282656-107384924 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
