Variant report

Variant	rs310965
Chromosome Location	chr13:63057830-63057831
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2649159	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310916	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310917	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310918	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310920	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310966	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310974	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs310975	0.82[ASN][1000 genomes]
rs310976	0.82[ASN][1000 genomes]
rs310977	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs312442	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430715	0.82[ASN][1000 genomes]
rs7989294	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528531	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528532	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539499	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs983634	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63057200-63058000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:63057400-63058600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:63057600-63058000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:63057600-63058200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:63057600-63058200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:63057600-63058200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:63057600-63058200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:63057600-63058400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:63057600-63058400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:63057600-63059000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:63057800-63058200	Enhancers	Dnd41	blood
12	chr13:63057800-63058400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:63057800-63058400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr13:63057800-63058400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr13:63057800-63058400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr13:63057800-63062200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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