Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1499494	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs188709	0.93[ASN][1000 genomes]
rs2649159	0.82[ASN][1000 genomes]
rs310916	0.82[ASN][1000 genomes]
rs310917	0.82[ASN][1000 genomes]
rs310918	0.82[ASN][1000 genomes]
rs310919	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs310920	0.82[ASN][1000 genomes]
rs310965	0.82[ASN][1000 genomes]
rs310966	0.82[ASN][1000 genomes]
rs310967	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs310975	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs312442	0.82[ASN][1000 genomes]
rs312446	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs364996	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs378506	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs380399	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs408599	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs430715	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989294	0.82[ASN][1000 genomes]
rs9528531	0.82[ASN][1000 genomes]
rs9528532	0.82[ASN][1000 genomes]
rs983634	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv974022	chr13:63047223-63057064	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63047200-63048400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:63047200-63048400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:63047200-63048600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:63047400-63048200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:63047600-63048200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:63047600-63048400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:63047800-63048200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr13:63047800-63048600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:63047800-63048800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:63048000-63048400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:63048000-63048400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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