Variant report
| Variant | rs983634 |
|---|---|
| Chromosome Location | chr13:63048962-63048963 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1499494 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs188709 | 0.93[ASN][1000 genomes] |
| rs2649159 | 0.82[ASN][1000 genomes] |
| rs310916 | 0.82[ASN][1000 genomes] |
| rs310917 | 0.82[ASN][1000 genomes] |
| rs310918 | 0.82[ASN][1000 genomes] |
| rs310919 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs310920 | 0.82[ASN][1000 genomes] |
| rs310965 | 0.82[ASN][1000 genomes] |
| rs310966 | 0.82[ASN][1000 genomes] |
| rs310967 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs310975 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs310976 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs312442 | 0.82[ASN][1000 genomes] |
| rs312446 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs364996 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs378506 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs380399 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs408599 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs430715 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7989294 | 0.82[ASN][1000 genomes] |
| rs9528531 | 0.82[ASN][1000 genomes] |
| rs9528532 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1038992 | chr13:62827929-63369497 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv541795 | chr13:62827929-63369497 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1038215 | chr13:62836702-63405446 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv974022 | chr13:63047223-63057064 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:63048400-63054600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr13:63048800-63049200 | Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
