Variant report

Variant	rs3110432
Chromosome Location	chr8:107614824-107614825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3016494	1.00[ASW][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs3110436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs776947	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107607400-107616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107607400-107617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:107607600-107616800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107610800-107616400	Weak transcription	HUVEC	blood vessel
8	chr8:107610800-107619200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107611000-107617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:107611600-107616600	Weak transcription	Stomach Mucosa	stomach
11	chr8:107611600-107619400	Weak transcription	Fetal Thymus	thymus
12	chr8:107612800-107618800	Weak transcription	Gastric	stomach
13	chr8:107613200-107616600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:107613800-107615400	Enhancers	Colon Smooth Muscle	Colon
15	chr8:107614400-107618400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:107614800-107616800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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