Variant report

Variant	rs776947
Chromosome Location	chr8:107682578-107682579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107682179..107684259-chr8:107690430..107692278,2	MCF-7	breast:
2	chr8:107680913..107683388-chr8:107685068..107687950,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3016494	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110432	0.81[AMR][1000 genomes]
rs3110436	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1799660	chr8:107679505-107689755	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107670800-107685800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:107671200-107697200	Weak transcription	HSMM	muscle
3	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
4	chr8:107672400-107685800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:107672600-107683600	Weak transcription	Hela-S3	cervix
7	chr8:107672600-107684400	Weak transcription	Fetal Intestine Small	intestine
8	chr8:107672600-107684800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:107672600-107686000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:107672600-107696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:107672800-107685800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr8:107672800-107696000	Weak transcription	Fetal Kidney	kidney
13	chr8:107673000-107684800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:107674400-107685800	Weak transcription	Fetal Stomach	stomach
15	chr8:107674400-107696000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr8:107676200-107685800	Weak transcription	Esophagus	oesophagus
17	chr8:107676200-107685800	Weak transcription	Gastric	stomach
18	chr8:107676200-107697400	Weak transcription	Left Ventricle	heart
19	chr8:107676800-107682600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:107677600-107685600	Weak transcription	Fetal Lung	lung
21	chr8:107677600-107709400	Weak transcription	Pancreas	Pancrea
22	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr8:107678400-107682800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr8:107678600-107683000	Enhancers	Primary B cells from peripheral blood	blood
25	chr8:107679200-107685800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:107679200-107685800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
28	chr8:107680800-107683200	Enhancers	Primary B cells from cord blood	blood
29	chr8:107681000-107684800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr8:107681200-107682800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
32	chr8:107681400-107685800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:107681600-107696600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:107681800-107685800	Weak transcription	Liver	Liver
35	chr8:107682000-107682600	Enhancers	Adipose Nuclei	Adipose
36	chr8:107682000-107683000	Flanking Active TSS	GM12878-XiMat	blood
37	chr8:107682200-107683000	ZNF genes & repeats	K562	blood
38	chr8:107682200-107696600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:107682400-107682800	Weak transcription	Ovary	ovary

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