Variant report

Variant	rs3111245
Chromosome Location	chr1:211395420-211395421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11581409	0.85[ASN][1000 genomes]
rs12041498	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs12071464	0.99[ASN][1000 genomes]
rs2095752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095753	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3111246	0.83[ASN][1000 genomes]
rs3125832	0.81[ASN][1000 genomes]
rs3125833	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57331968	0.88[ASN][1000 genomes]
rs61850977	0.99[ASN][1000 genomes]
rs61850982	0.88[ASN][1000 genomes]
rs7532911	0.94[MKK][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211394600-211395800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:211395200-211395600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:211395200-211396400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:211395400-211395800	Flanking Active TSS	K562	blood
5	chr1:211395400-211396400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links