Variant report

Variant	rs3111246
Chromosome Location	chr1:211396420-211396421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10779553	0.80[ASN][1000 genomes]
rs10863883	0.81[ASN][1000 genomes]
rs11811405	0.81[ASN][1000 genomes]
rs12071464	0.82[ASN][1000 genomes]
rs12744021	0.81[ASN][1000 genomes]
rs2095752	0.83[ASN][1000 genomes]
rs2095753	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111244	0.90[ASN][1000 genomes]
rs3111245	0.83[ASN][1000 genomes]
rs3111258	0.81[ASN][1000 genomes]
rs3125831	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3125832	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3125833	0.83[ASN][1000 genomes]
rs35426013	0.81[ASN][1000 genomes]
rs4131375	0.88[ASN][1000 genomes]
rs57331968	0.81[ASN][1000 genomes]
rs61850977	0.82[ASN][1000 genomes]
rs61850982	0.81[ASN][1000 genomes]
rs6700747	0.81[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211395600-211396600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:211395600-211396800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:211395800-211396600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:211395800-211399000	Enhancers	K562	blood
5	chr1:211396400-211397400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:211396400-211397800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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