Variant report

Variant	rs35426013
Chromosome Location	chr1:211430728-211430729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:211430713-211430750	K562	blood:	n/a	n/a
2	SP1	chr1:211430446-211431094	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr1:211430686-211433120	K562	blood:	n/a	n/a
4	JUN	chr1:211430435-211433224	K562	blood:	n/a	chr1:211432319-211432328 chr1:211432316-211432325
5	POLR2A	chr1:211430347-211433230	H1-hESC	embryonic stem cell:	n/a	n/a
6	TAF1	chr1:211430687-211431050	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr1:211430683-211431147	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr1:211430667-211431358	HepG2	liver:	n/a	n/a
9	POLR2A	chr1:211430563-211431100	HepG2	liver:	n/a	n/a
10	TBP	chr1:211430478-211431101	H1-hESC	embryonic stem cell:	n/a	n/a
11	HEY1	chr1:211430624-211431108	HepG2	liver:	n/a	n/a
12	SP1	chr1:211430483-211431073	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr1:211430635-211433337	K562	blood:	n/a	n/a
14	TEAD4	chr1:211430525-211431040	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr1:211430295-211434862	K562	blood:	n/a	n/a
16	POLR2A	chr1:211430530-211433111	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr1:211430588-211431120	H1-hESC	embryonic stem cell:	n/a	n/a
18	CEBPB	chr1:211430445-211430775	H1-hESC	embryonic stem cell:	n/a	n/a
19	TBL1XR1	chr1:211430722-211432763	K562	blood:	n/a	n/a
20	POLR2A	chr1:211430659-211431038	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr1:211430587-211431121	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210543442..210549646-chr1:211430130..211435518,10	MCF-7	breast:
2	chr1:211429664..211434083-chr1:211498779..211503937,6	K562	blood:
3	chr1:211429664..211435180-chr1:211498779..211503937,6	K562	blood:
4	chr1:211429991..211432106-chr1:211750411..211752434,2	MCF-7	breast:

No data

Variant related genes	Relation type
RCOR3	TF binding region
ENSG00000082512	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10779552	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10779553	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10863882	0.81[ASN][1000 genomes]
rs10863883	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10863884	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11119716	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11580084	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11811405	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12027724	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12116749	0.83[ASN][1000 genomes]
rs12118279	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12403576	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12744021	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2095753	0.81[ASN][1000 genomes]
rs3111246	0.81[ASN][1000 genomes]
rs3111252	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3111255	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3111257	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3111258	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3120782	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3120789	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3125854	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767377	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3767378	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4131375	0.82[ASN][1000 genomes]
rs4366377	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4406705	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4951520	0.94[ASN][1000 genomes]
rs4951736	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6696938	0.91[ASN][1000 genomes]
rs6700747	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702366	0.85[ASN][1000 genomes]
rs7520989	0.94[ASN][1000 genomes]
rs7538692	0.94[ASN][1000 genomes]
rs7538812	0.82[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211429400-211431200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:211429400-211431200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:211429800-211430800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:211429800-211430800	Enhancers	Fetal Kidney	kidney
5	chr1:211429800-211431200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:211430000-211430800	Enhancers	Colon Smooth Muscle	Colon
7	chr1:211430200-211430800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:211430200-211430800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:211430200-211430800	Enhancers	Fetal Intestine Small	intestine
10	chr1:211430200-211430800	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:211430200-211430800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr1:211430200-211430800	Active TSS	HepG2	liver
13	chr1:211430200-211431000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:211430200-211431000	Enhancers	Fetal Intestine Large	intestine
15	chr1:211430200-211431000	Enhancers	Fetal Stomach	stomach
16	chr1:211430200-211431200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:211430200-211431200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:211430200-211431400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr1:211430200-211431400	Enhancers	Placenta	Placenta
20	chr1:211430400-211430800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr1:211430400-211430800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:211430400-211430800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:211430400-211430800	Enhancers	Adipose Nuclei	Adipose
24	chr1:211430400-211430800	Enhancers	Fetal Heart	heart
25	chr1:211430400-211430800	Enhancers	Stomach Smooth Muscle	stomach
26	chr1:211430400-211430800	Enhancers	NH-A	brain
27	chr1:211430400-211430800	Enhancers	NHDF-Ad	bronchial
28	chr1:211430400-211431000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:211430400-211431000	Enhancers	Brain Anterior Caudate	brain
30	chr1:211430400-211431000	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr1:211430400-211431000	Active TSS	Duodenum Mucosa	Duodenum
32	chr1:211430400-211431200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:211430400-211431200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:211430400-211431200	Enhancers	Primary hematopoietic stem cells	blood
35	chr1:211430400-211431200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:211430400-211431200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr1:211430400-211431200	Enhancers	Fetal Brain Male	brain
38	chr1:211430400-211431200	Enhancers	Fetal Muscle Leg	muscle
39	chr1:211430400-211431200	Enhancers	Left Ventricle	heart
40	chr1:211430400-211431200	Enhancers	Lung	lung
41	chr1:211430400-211431200	Enhancers	Stomach Mucosa	stomach
42	chr1:211430400-211431600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr1:211430400-211431600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr1:211430400-211431600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr1:211430400-211431600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr1:211430600-211430800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:211430600-211430800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:211430600-211430800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr1:211430600-211430800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:211430600-211430800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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