Variant report

Variant	rs4951520
Chromosome Location	chr1:211465623-211465624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211464997..211467181-chr1:211468557..211470488,2	K562	blood:
2	chr1:211436850..211440401-chr1:211465425..211468095,4	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1055565	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs10779553	0.92[ASN][1000 genomes]
rs1084981	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs10863883	0.93[ASN][1000 genomes]
rs10863884	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863888	0.92[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs11119716	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11580084	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11811405	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs12027724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12116749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12118279	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.91[ASN][1000 genomes]
rs12403576	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12744021	0.93[ASN][1000 genomes]
rs1533217	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1663522	0.95[CEU][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs2798559	0.81[EUR][1000 genomes]
rs2920911	0.81[EUR][1000 genomes]
rs3002258	0.81[EUR][1000 genomes]
rs3111252	0.88[ASN][1000 genomes]
rs3111255	0.87[ASN][1000 genomes]
rs3111257	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];0.88[ASN][1000 genomes]
rs3111258	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs3120789	0.88[ASN][1000 genomes]
rs3125854	0.89[ASN][1000 genomes]
rs35426013	0.94[ASN][1000 genomes]
rs3738199	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[TSI][hapmap]
rs3767377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3767378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4366377	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4406705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951523	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs4951736	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951741	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4951742	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6667740	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6689078	0.86[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6696938	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6700747	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.94[ASN][1000 genomes]
rs6702366	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6703361	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7520989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538812	0.85[ASN][1000 genomes]
rs7550702	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs784369	0.81[EUR][1000 genomes]
rs784379	0.84[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];0.85[LWK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs784382	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs784383	0.81[EUR][1000 genomes]
rs784385	0.84[ASW][hapmap];0.91[CEU][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs784389	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4951520	C1orf74	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211487000	Weak transcription	Gastric	stomach
2	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:211434800-211474200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:211438800-211478800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:211439800-211478200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:211440800-211481800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:211440800-211483600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr1:211443000-211480000	Strong transcription	Dnd41	blood
9	chr1:211443000-211480400	Strong transcription	Placenta	Placenta
10	chr1:211443200-211484000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:211443800-211478200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:211444400-211479000	Strong transcription	Liver	Liver
13	chr1:211444600-211471000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:211444600-211478000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:211444600-211479200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr1:211444800-211491200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:211445800-211486800	Weak transcription	Esophagus	oesophagus
18	chr1:211447800-211479200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr1:211447800-211486200	Weak transcription	Stomach Mucosa	stomach
20	chr1:211449000-211479800	Strong transcription	Fetal Thymus	thymus
21	chr1:211449400-211482000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:211450400-211480200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr1:211451000-211467600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:211452200-211469400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:211453200-211466600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:211455000-211486800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:211455200-211471200	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:211455200-211478600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:211455800-211467800	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr1:211456000-211466800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:211456000-211467800	Strong transcription	Thymus	Thymus
32	chr1:211456000-211478200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:211456200-211469600	Strong transcription	Hela-S3	cervix
34	chr1:211456400-211470000	Strong transcription	Primary T cells from cord blood	blood
35	chr1:211456600-211486000	Weak transcription	Small Intestine	intestine
36	chr1:211456800-211470600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:211458000-211470600	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:211458200-211473000	Strong transcription	NHDF-Ad	bronchial
39	chr1:211459000-211477600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:211459200-211477800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr1:211459600-211467000	Strong transcription	Fetal Stomach	stomach
42	chr1:211460000-211470000	Strong transcription	Osteobl	bone
43	chr1:211460000-211478200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:211460000-211478200	Strong transcription	Fetal Intestine Large	intestine
45	chr1:211460200-211468000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr1:211460200-211470200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:211460400-211472000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr1:211460400-211479600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:211460600-211469400	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:211460600-211470200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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