Variant report

Variant	rs4366377
Chromosome Location	chr1:211435320-211435321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210543442..210549646-chr1:211430130..211435518,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10779553	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10863883	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863884	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863888	0.82[EUR][1000 genomes]
rs11119716	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11580084	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11811405	0.96[ASN][1000 genomes]
rs12027724	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12116749	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12118279	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12403576	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12744021	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1533217	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3111252	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3111255	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3111257	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3111258	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3120782	0.81[ASN][1000 genomes]
rs3120789	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3125854	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35426013	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767377	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767378	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4406705	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951520	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951523	0.81[EUR][1000 genomes]
rs4951736	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951741	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4951742	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6667740	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6689078	0.82[ASN][1000 genomes]
rs6696938	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6700747	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6702366	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6703361	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7520989	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7538692	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7538812	0.84[ASN][1000 genomes]
rs7550702	0.81[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211443200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:211434400-211444800	Weak transcription	Lung	lung
3	chr1:211434400-211453200	Weak transcription	Small Intestine	intestine
4	chr1:211434400-211453400	Weak transcription	Spleen	Spleen
5	chr1:211434400-211454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:211434400-211487000	Weak transcription	Gastric	stomach
7	chr1:211434600-211437200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:211434600-211443200	Weak transcription	Ovary	ovary
9	chr1:211434600-211444800	Weak transcription	Esophagus	oesophagus
10	chr1:211434600-211449200	Weak transcription	Colonic Mucosa	Colon
11	chr1:211434600-211453400	Weak transcription	Aorta	Aorta
12	chr1:211434600-211454000	Weak transcription	Pancreas	Pancrea
13	chr1:211434600-211462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr1:211434800-211435400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr1:211434800-211435400	Enhancers	Primary hematopoietic stem cells	blood
17	chr1:211434800-211435400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:211434800-211435400	Enhancers	Brain Hippocampus Middle	brain
19	chr1:211434800-211435600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:211434800-211435600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:211434800-211435600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:211434800-211435600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr1:211434800-211436000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:211434800-211437200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:211434800-211437200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:211434800-211437200	Weak transcription	Fetal Intestine Small	intestine
27	chr1:211434800-211437200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr1:211434800-211437400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr1:211434800-211437400	Weak transcription	Primary B cells from cord blood	blood
30	chr1:211434800-211437400	Weak transcription	Fetal Thymus	thymus
31	chr1:211434800-211437600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr1:211434800-211437800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:211434800-211437800	Strong transcription	Placenta	Placenta
34	chr1:211434800-211437800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:211434800-211439200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:211434800-211440200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr1:211434800-211440200	Weak transcription	Brain Angular Gyrus	brain
38	chr1:211434800-211440200	Weak transcription	NHLF	lung
39	chr1:211434800-211442400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:211434800-211444600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr1:211434800-211444800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:211434800-211444800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr1:211434800-211444800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:211434800-211444800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:211434800-211444800	Weak transcription	Psoas Muscle	Psoas
46	chr1:211434800-211444800	Weak transcription	HUVEC	blood vessel
47	chr1:211434800-211445000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:211434800-211445000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr1:211434800-211445000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr1:211434800-211445000	Weak transcription	Left Ventricle	heart

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