Variant report

Variant	rs12403576
Chromosome Location	chr1:211439571-211439572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211436850..211440401-chr1:211465425..211468095,4	K562	blood:
2	chr1:211429837..211436760-chr1:211437638..211443752,13	K562	blood:
3	chr1:211431733..211435649-chr1:211435792..211441585,10	MCF-7	breast:
4	chr1:211438204..211440790-chr1:211452886..211454870,2	K562	blood:
5	chr1:211432823..211435756-chr1:211438488..211442350,5	MCF-7	breast:
6	chr1:211438140..211440660-chr1:211456213..211457915,2	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10779553	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10863883	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10863884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10863888	0.82[EUR][1000 genomes]
rs11119716	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11580084	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11811405	0.94[ASN][1000 genomes]
rs12027724	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116749	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12118279	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12744021	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1533217	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3111252	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3111255	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3111257	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3111258	0.94[ASN][1000 genomes]
rs3120782	0.80[ASN][1000 genomes]
rs3120789	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3125854	0.90[ASN][1000 genomes]
rs35426013	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3767377	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3767378	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366377	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4406705	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951520	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951523	0.81[EUR][1000 genomes]
rs4951736	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951741	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4951742	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6667740	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6689078	0.83[ASN][1000 genomes]
rs6696938	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6700747	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6702366	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6703361	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7520989	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7538692	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7538812	0.86[ASN][1000 genomes]
rs7550702	0.81[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211443200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:211434400-211444800	Weak transcription	Lung	lung
3	chr1:211434400-211453200	Weak transcription	Small Intestine	intestine
4	chr1:211434400-211453400	Weak transcription	Spleen	Spleen
5	chr1:211434400-211454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:211434400-211487000	Weak transcription	Gastric	stomach
7	chr1:211434600-211443200	Weak transcription	Ovary	ovary
8	chr1:211434600-211444800	Weak transcription	Esophagus	oesophagus
9	chr1:211434600-211449200	Weak transcription	Colonic Mucosa	Colon
10	chr1:211434600-211453400	Weak transcription	Aorta	Aorta
11	chr1:211434600-211454000	Weak transcription	Pancreas	Pancrea
12	chr1:211434600-211462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:211434800-211440200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:211434800-211440200	Weak transcription	Brain Angular Gyrus	brain
16	chr1:211434800-211440200	Weak transcription	NHLF	lung
17	chr1:211434800-211442400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:211434800-211444600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr1:211434800-211444800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:211434800-211444800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:211434800-211444800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:211434800-211444800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:211434800-211444800	Weak transcription	Psoas Muscle	Psoas
24	chr1:211434800-211444800	Weak transcription	HUVEC	blood vessel
25	chr1:211434800-211445000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:211434800-211445000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr1:211434800-211445000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr1:211434800-211445000	Weak transcription	Left Ventricle	heart
29	chr1:211434800-211453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:211434800-211453400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr1:211434800-211462600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr1:211434800-211464800	Weak transcription	Right Ventricle	heart
33	chr1:211434800-211474200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:211435000-211439800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:211435000-211439800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr1:211435000-211439800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr1:211435000-211439800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr1:211435000-211439800	Weak transcription	HMEC	breast
39	chr1:211435000-211439800	Weak transcription	Osteobl	bone
40	chr1:211435000-211440000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:211435000-211440200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:211435000-211440200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:211435000-211440200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr1:211435000-211440200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:211435000-211440200	Weak transcription	Liver	Liver
46	chr1:211435000-211440200	Weak transcription	Colon Smooth Muscle	Colon
47	chr1:211435000-211440200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:211435000-211440200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr1:211435000-211440400	Weak transcription	Adipose Nuclei	Adipose
50	chr1:211435000-211440400	Weak transcription	Fetal Kidney	kidney

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