Variant report

Variant	rs3767377
Chromosome Location	chr1:211452678-211452679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211431689..211435313-chr1:211451941..211455577,4	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1055565	0.96[CEU][hapmap]
rs10779553	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1084981	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10863883	0.93[ASN][1000 genomes]
rs10863884	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863888	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs11119716	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11580084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11811405	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12027724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12116749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12118279	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12403576	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12744021	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1533217	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1663522	0.96[CEU][hapmap]
rs3111252	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3111255	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3111257	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3111258	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3120789	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3125854	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35426013	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3738199	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs3767378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4366377	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4406705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951523	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs4951736	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951741	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4951742	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6667740	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6689078	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6696938	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6700747	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6702366	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6703361	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7520989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7538692	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7538812	0.85[ASN][1000 genomes]
rs7550702	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs784379	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[YRI][hapmap]
rs784382	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs784385	0.91[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv159013	chr1:211449555-211453750	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211453200	Weak transcription	Small Intestine	intestine
2	chr1:211434400-211453400	Weak transcription	Spleen	Spleen
3	chr1:211434400-211454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:211434400-211487000	Weak transcription	Gastric	stomach
5	chr1:211434600-211453400	Weak transcription	Aorta	Aorta
6	chr1:211434600-211454000	Weak transcription	Pancreas	Pancrea
7	chr1:211434600-211462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:211434800-211453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:211434800-211453400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:211434800-211462600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:211434800-211464800	Weak transcription	Right Ventricle	heart
13	chr1:211434800-211474200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:211435600-211460800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:211436200-211456800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:211437000-211454600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:211438800-211478800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:211439800-211478200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:211440000-211458200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:211440600-211454400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:211440800-211481800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr1:211440800-211483600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr1:211441200-211461200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:211443000-211480000	Strong transcription	Dnd41	blood
25	chr1:211443000-211480400	Strong transcription	Placenta	Placenta
26	chr1:211443200-211460800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr1:211443200-211484000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:211443600-211454400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr1:211443800-211460400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr1:211443800-211478200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:211444200-211459400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:211444400-211454000	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr1:211444400-211479000	Strong transcription	Liver	Liver
34	chr1:211444600-211454400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:211444600-211454400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:211444600-211457000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:211444600-211457200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:211444600-211459000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr1:211444600-211459800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:211444600-211471000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:211444600-211478000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr1:211444600-211479200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr1:211444800-211454600	Strong transcription	K562	blood
44	chr1:211444800-211455400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:211444800-211460600	Strong transcription	HSMM	muscle
46	chr1:211444800-211491200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr1:211445000-211454000	Strong transcription	NHDF-Ad	bronchial
48	chr1:211445000-211454400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr1:211445200-211454000	Weak transcription	Fetal Intestine Small	intestine
50	chr1:211445200-211454000	Weak transcription	Lung	lung

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