Variant report

Variant	rs12744021
Chromosome Location	chr1:211428784-211428785
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:211428730-211428787	K562	blood:	n/a	n/a
2	ZNF384	chr1:211428657-211428979	K562	blood:	n/a	n/a
3	CTCF	chr1:211428729-211428813	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211427147..211429849-chr1:211432541..211434777,4	K562	blood:

Variant related genes	Relation type
RCOR3	TF binding region
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10779552	0.89[EUR][1000 genomes]
rs10779553	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10863882	0.81[ASN][1000 genomes]
rs10863883	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863884	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11119716	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11580084	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11811405	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027724	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12116749	0.82[ASN][1000 genomes]
rs12118279	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12403576	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2095753	0.81[ASN][1000 genomes]
rs3111244	0.80[ASN][1000 genomes]
rs3111246	0.81[ASN][1000 genomes]
rs3111252	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3111255	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3111257	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3111258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3120782	0.86[ASN][1000 genomes]
rs3120789	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3125832	0.80[ASN][1000 genomes]
rs3125854	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35426013	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3767377	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3767378	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4131375	0.83[ASN][1000 genomes]
rs4366377	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4406705	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4951520	0.93[ASN][1000 genomes]
rs4951736	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6696938	0.90[ASN][1000 genomes]
rs6700747	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6702366	0.84[ASN][1000 genomes]
rs7520989	0.93[ASN][1000 genomes]
rs7538692	0.93[ASN][1000 genomes]
rs7538812	0.82[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211421400-211430400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211421600-211429800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:211421600-211429800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:211421800-211429800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:211421800-211430200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:211421800-211430400	Weak transcription	K562	blood
7	chr1:211423200-211429800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:211423600-211430200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:211428600-211428800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:211428600-211429800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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