Variant report

Variant	rs10779553
Chromosome Location	chr1:211429592-211429593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211427147..211429849-chr1:211432541..211434777,4	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10779552	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10863882	0.80[ASN][1000 genomes]
rs10863883	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10863884	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11119716	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11580084	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11811405	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12027724	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12116749	0.81[ASN][1000 genomes]
rs12118279	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12403576	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12744021	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2095753	0.80[ASN][1000 genomes]
rs3111246	0.80[ASN][1000 genomes]
rs3111252	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3111255	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3111257	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3111258	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3120782	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3120789	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3125854	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35426013	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3767377	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3767378	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4131375	0.82[ASN][1000 genomes]
rs4366377	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4406705	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4951520	0.92[ASN][1000 genomes]
rs4951736	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6696938	0.89[ASN][1000 genomes]
rs6700747	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6702366	0.86[ASN][1000 genomes]
rs7520989	0.92[ASN][1000 genomes]
rs7538692	0.92[ASN][1000 genomes]
rs7538812	0.80[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211421400-211430400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211421600-211429800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:211421600-211429800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:211421800-211429800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:211421800-211430200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:211421800-211430400	Weak transcription	K562	blood
7	chr1:211423200-211429800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:211423600-211430200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:211428600-211429800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:211429400-211430400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:211429400-211431200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:211429400-211431200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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