Variant report

Variant	rs3123660
Chromosome Location	chr10:44162728-44162729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44162351..44163308-chr10:44881741..44882672,2	K562	blood:
2	chr10:44151901..44153868-chr10:44162528..44164728,2	K562	blood:

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs3123656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123659	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3123663	0.90[EUR][1000 genomes]
rs3123664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123675	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128244	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3128246	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128248	1.00[ASN][1000 genomes]
rs3128251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128252	0.90[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44161800-44163400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:44162000-44163000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
3	chr10:44162000-44163000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:44162000-44163000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:44162000-44163000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:44162000-44163400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44162000-44163400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr10:44162200-44163000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
9	chr10:44162400-44163000	Enhancers	Fetal Kidney	kidney
10	chr10:44162400-44163200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
11	chr10:44162600-44162800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:44162600-44162800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr10:44162600-44162800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:44162600-44162800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:44162600-44162800	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr10:44162600-44162800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
17	chr10:44162600-44162800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:44162600-44162800	Enhancers	Brain Anterior Caudate	brain
19	chr10:44162600-44162800	Enhancers	Duodenum Mucosa	Duodenum
20	chr10:44162600-44162800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
21	chr10:44162600-44162800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr10:44162600-44162800	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr10:44162600-44162800	Bivalent Enhancer	Fetal Stomach	stomach
24	chr10:44162600-44162800	Bivalent Enhancer	Psoas Muscle	Psoas
25	chr10:44162600-44162800	Genic enhancers	Right Atrium	heart
26	chr10:44162600-44162800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
27	chr10:44162600-44163000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
28	chr10:44162600-44163000	Bivalent Enhancer	Adipose Nuclei	Adipose
29	chr10:44162600-44163000	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr10:44162600-44163000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr10:44162600-44163000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
32	chr10:44162600-44163000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
33	chr10:44162600-44163200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr10:44162600-44163200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:44162600-44163200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:44162600-44163200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:44162600-44163200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
38	chr10:44162600-44163200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
39	chr10:44162600-44163200	Enhancers	Spleen	Spleen
40	chr10:44162600-44163200	Flanking Active TSS	NH-A	brain
41	chr10:44162600-44163200	Active TSS	Osteobl	bone
42	chr10:44162600-44163400	Enhancers	Fetal Heart	heart
43	chr10:44162600-44163400	Bivalent Enhancer	Fetal Lung	lung
44	chr10:44162600-44163600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
45	chr10:44162600-44163600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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