Variant report

Variant	rs3123672
Chromosome Location	chr10:44142583-44142584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr10:44142417-44142775	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44101689..44104570-chr10:44142385..44144867,2	K562	blood:
2	chr10:44138867..44141721-chr10:44141933..44143603,2	MCF-7	breast:
3	chr10:43915151..43917098-chr10:44141914..44144023,2	MCF-7	breast:
4	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:
5	chr10:44123689..44125547-chr10:44142014..44144149,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF485-2	chr10:44142560-44142657	ENSG00000230565.1

No data

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000198298	Chromatin interaction
ENSG00000230555	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000223910	Chromatin interaction
ENSG00000230565	Chromatin interaction
ENSG00000226245	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs3123656	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123658	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123659	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3123660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123663	0.87[EUR][1000 genomes]
rs3123664	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123665	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123666	1.00[YRI][hapmap]
rs3123670	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs3123675	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128244	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3128246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128248	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3128251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128252	0.81[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44135600-44142800	ZNF genes & repeats	Fetal Brain Female	brain
2	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
3	chr10:44137000-44143000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:44137200-44142800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr10:44137400-44142600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
11	chr10:44137400-44143200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr10:44137400-44143200	ZNF genes & repeats	Fetal Kidney	kidney
13	chr10:44137400-44143400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:44137600-44142800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr10:44137600-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:44137600-44143400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
17	chr10:44137800-44142600	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr10:44137800-44142600	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr10:44137800-44142800	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:44137800-44143600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:44138000-44143000	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr10:44138000-44143200	ZNF genes & repeats	Fetal Brain Male	brain
27	chr10:44138200-44143600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr10:44138400-44143000	Weak transcription	HepG2	liver
29	chr10:44138400-44143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:44138600-44143200	ZNF genes & repeats	NHDF-Ad	bronchial
31	chr10:44138600-44143400	ZNF genes & repeats	Dnd41	blood
32	chr10:44139000-44142600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
33	chr10:44139000-44143600	ZNF genes & repeats	A549	lung
34	chr10:44139200-44143200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
35	chr10:44139400-44143600	ZNF genes & repeats	Fetal Stomach	stomach
36	chr10:44139400-44143800	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr10:44139800-44143400	ZNF genes & repeats	GM12878-XiMat	blood
38	chr10:44140400-44142600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:44140400-44143600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:44141000-44143400	Weak transcription	HUVEC	blood vessel
41	chr10:44141600-44143000	Weak transcription	Right Ventricle	heart
42	chr10:44141600-44143200	Weak transcription	Brain Angular Gyrus	brain
43	chr10:44141600-44143600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr10:44141800-44143000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:44141800-44143000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:44141800-44143000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr10:44141800-44143000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:44141800-44143000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:44141800-44143200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:44141800-44143400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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