Variant report

Variant	rs3128246
Chromosome Location	chr10:44142292-44142293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:44142209-44142425	HUVEC	blood vessel:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44140472..44142370-chr10:44143162..44146127,2	MCF-7	breast:
2	chr10:44138867..44141721-chr10:44141933..44143603,2	MCF-7	breast:
3	chr10:43915151..43917098-chr10:44141914..44144023,2	MCF-7	breast:
4	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:
5	chr10:44123689..44125547-chr10:44142014..44144149,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000226245	Chromatin interaction
ENSG00000230565	Chromatin interaction
ENSG00000223910	Chromatin interaction
ENSG00000230555	Chromatin interaction
ENSG00000169740	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3123656	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123658	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123659	0.96[EUR][1000 genomes]
rs3123660	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123663	0.87[EUR][1000 genomes]
rs3123664	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123665	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123670	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs3123672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123675	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128244	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3128248	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3128251	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128252	0.81[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44135600-44142800	ZNF genes & repeats	Fetal Brain Female	brain
2	chr10:44136800-44142400	ZNF genes & repeats	Liver	Liver
3	chr10:44136800-44142400	ZNF genes & repeats	HSMM	muscle
4	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
5	chr10:44137000-44143000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:44137200-44142800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr10:44137400-44142400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
13	chr10:44137400-44142600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
14	chr10:44137400-44143200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr10:44137400-44143200	ZNF genes & repeats	Fetal Kidney	kidney
16	chr10:44137400-44143400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:44137600-44142400	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr10:44137600-44142800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr10:44137600-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:44137600-44143400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
21	chr10:44137800-44142400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:44137800-44142400	ZNF genes & repeats	Ovary	ovary
23	chr10:44137800-44142600	ZNF genes & repeats	Colon Smooth Muscle	Colon
24	chr10:44137800-44142600	ZNF genes & repeats	Fetal Intestine Large	intestine
25	chr10:44137800-44142800	ZNF genes & repeats	Fetal Muscle Leg	muscle
26	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:44137800-44143600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:44138000-44142400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:44138000-44142400	ZNF genes & repeats	Osteobl	bone
33	chr10:44138000-44143000	ZNF genes & repeats	Primary T cells from cord blood	blood
34	chr10:44138000-44143200	ZNF genes & repeats	Fetal Brain Male	brain
35	chr10:44138200-44142400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:44138200-44143600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr10:44138400-44142400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
38	chr10:44138400-44142400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
39	chr10:44138400-44142400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
40	chr10:44138400-44143000	Weak transcription	HepG2	liver
41	chr10:44138400-44143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:44138600-44142400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:44138600-44142400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
44	chr10:44138600-44142400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:44138600-44142400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:44138600-44142400	ZNF genes & repeats	HSMMtube	muscle
47	chr10:44138600-44143200	ZNF genes & repeats	NHDF-Ad	bronchial
48	chr10:44138600-44143400	ZNF genes & repeats	Dnd41	blood
49	chr10:44138800-44142400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
50	chr10:44138800-44142400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

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