Variant report

Variant	rs3128254
Chromosome Location	chr10:44103616-44103617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:44101715-44104132	K562	blood:	n/a	n/a
2	POLR2A	chr10:44103572-44104198	Hela-S3	cervix:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44069900..44072346-chr10:44103249..44105507,2	K562	blood:
2	chr10:44101948..44103736-chr10:44112842..44114358,2	MCF-7	breast:
3	chr10:44089879..44092724-chr10:44102524..44104158,2	MCF-7	breast:
4	chr10:44068620..44071892-chr10:44099602..44104778,6	MCF-7	breast:
5	chr10:44100739..44103272-chr10:44103308..44105491,2	MCF-7	breast:
6	chr10:44101689..44104570-chr10:44142385..44144867,2	K562	blood:

No data

Variant related genes	Relation type
CAP1P2	TF binding region
ENSG00000169740	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000196793	Chromatin interaction
ENSG00000232004	Chromatin interaction

rs_ID	r²[population]
rs11238575	1.00[CHD][hapmap]
rs12359825	1.00[CHD][hapmap]
rs12359980	1.00[CHD][hapmap]
rs2999237	1.00[CHD][hapmap]
rs3006389	1.00[CHD][hapmap]
rs3123679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs3128254	SLC39A4	trans	lymphoblastoid	seeQTL
rs3128254	ZNF239	cis	parietal	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44102400-44108800	Weak transcription	Aorta	Aorta
2	chr10:44102600-44104000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:44102600-44104200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:44102600-44105200	Weak transcription	Right Atrium	heart
5	chr10:44102600-44108400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:44102600-44108600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:44102600-44112200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:44102800-44103800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:44102800-44103800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:44102800-44103800	Weak transcription	Liver	Liver
11	chr10:44102800-44103800	Weak transcription	Fetal Stomach	stomach
12	chr10:44102800-44104000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:44102800-44104000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:44102800-44104000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:44102800-44104000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:44102800-44104000	Weak transcription	Ovary	ovary
17	chr10:44102800-44104000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:44102800-44104200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:44102800-44104400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:44102800-44104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:44102800-44104600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:44102800-44104600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:44102800-44104600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:44102800-44104600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr10:44102800-44104600	Weak transcription	NHEK	skin
26	chr10:44102800-44105200	Weak transcription	HSMMtube	muscle
27	chr10:44102800-44105200	Weak transcription	NHLF	lung
28	chr10:44102800-44105400	Weak transcription	HSMM	muscle
29	chr10:44102800-44106200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:44102800-44107000	Weak transcription	Spleen	Spleen
31	chr10:44102800-44108800	Weak transcription	Esophagus	oesophagus
32	chr10:44102800-44108800	Weak transcription	Lung	lung
33	chr10:44102800-44108800	Weak transcription	NH-A	brain
34	chr10:44102800-44108800	Weak transcription	NHDF-Ad	bronchial
35	chr10:44102800-44109200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:44102800-44109600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:44102800-44109800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:44102800-44109800	Weak transcription	Thymus	Thymus
39	chr10:44102800-44110200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:44102800-44110800	Weak transcription	Gastric	stomach
41	chr10:44102800-44110800	Weak transcription	Small Intestine	intestine
42	chr10:44102800-44110800	Weak transcription	Stomach Mucosa	stomach
43	chr10:44102800-44111000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:44102800-44111200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:44102800-44111200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:44102800-44111400	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:44102800-44111400	Weak transcription	Colon Smooth Muscle	Colon
48	chr10:44102800-44111400	Weak transcription	Fetal Lung	lung
49	chr10:44102800-44111600	Weak transcription	Left Ventricle	heart
50	chr10:44102800-44111800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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