Variant report

Variant	rs3135326
Chromosome Location	chr6:28926583-28926584
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28926035..28928870-chr6:28956157..28957921,2	K562	blood:
2	chr6:28926004..28928309-chr6:28944355..28946221,2	K562	blood:
3	chr6:28905933..28927444-chr6:28943937..28954526,53	K562	blood:

Variant related genes	Relation type
ENSG00000227214	Chromatin interaction
ENSG00000263426	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1002925	0.82[EUR][1000 genomes]
rs1237485	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1476016	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1794587	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs184093	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2006173	0.80[EUR][1000 genomes]
rs2013848	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2032500	0.84[EUR][1000 genomes]
rs2071785	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2071790	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs209122	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs209126	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs209128	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs209129	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs209137	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs209138	0.85[EUR][1000 genomes]
rs209148	0.84[EUR][1000 genomes]
rs209149	0.83[EUR][1000 genomes]
rs209152	0.81[EUR][1000 genomes]
rs209153	0.84[EUR][1000 genomes]
rs209160	0.81[EUR][1000 genomes]
rs209161	0.84[EUR][1000 genomes]
rs209163	0.84[EUR][1000 genomes]
rs209164	0.81[EUR][1000 genomes]
rs209176	0.82[EUR][1000 genomes]
rs209184	0.80[EUR][1000 genomes]
rs2157312	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2157313	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2187807	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2187808	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2765229	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3129792	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3129793	0.83[EUR][1000 genomes]
rs3130841	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3130842	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3130886	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3130889	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3130897	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3131070	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3131074	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131077	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131100	0.81[EUR][1000 genomes]
rs3131102	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3132386	0.82[EUR][1000 genomes]
rs3135303	0.84[EUR][1000 genomes]
rs3135315	0.86[EUR][1000 genomes]
rs3135319	0.80[EUR][1000 genomes]
rs3135321	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3135322	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3135323	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3135324	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3135327	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3135328	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs377392	0.80[EUR][1000 genomes]
rs381808	0.86[EUR][1000 genomes]
rs386628	0.80[EUR][1000 genomes]
rs393431	0.82[EUR][1000 genomes]
rs4427026	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4713186	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4713187	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4713188	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4713190	0.81[ASN][1000 genomes]
rs4713192	0.81[ASN][1000 genomes]
rs4947339	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6456876	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6456880	0.80[ASN][1000 genomes]
rs6901599	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6914955	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6920392	0.81[ASN][1000 genomes]
rs6931823	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs763009	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7743189	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7761547	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9257401	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9257404	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9257405	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9257421	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9257447	0.80[ASN][1000 genomes]
rs9257449	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv830622	chr6:28861667-29015804	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
4	nsv1023540	chr6:28922691-29326018	Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv538169	chr6:28922691-29326018	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv869541	chr6:28922692-29326017	Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	nsv916439	chr6:28922697-29326087	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
8	nsv462668	chr6:28922719-29342775	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
9	nsv601213	chr6:28922719-29342775	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
10	nsv1015796	chr6:28923980-29342825	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28922200-28928400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28922200-28930600	Weak transcription	Right Atrium	heart
3	chr6:28923000-28928600	Weak transcription	HepG2	liver
4	chr6:28923400-28928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:28923800-28928600	Weak transcription	NHEK	skin
6	chr6:28925000-28927000	Weak transcription	K562	blood

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