Variant report

Variant	rs314207
Chromosome Location	chr6:69866222-69866223
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1083694	0.93[ASN][1000 genomes]
rs1283617	0.93[ASN][1000 genomes]
rs13191298	0.91[ASN][1000 genomes]
rs1321979	0.91[ASN][1000 genomes]
rs1321980	0.91[ASN][1000 genomes]
rs1407269	0.91[ASN][1000 genomes]
rs1512233	0.93[ASN][1000 genomes]
rs1751710	1.00[ASN][1000 genomes]
rs2050918	0.93[ASN][1000 genomes]
rs2181002	0.91[ASN][1000 genomes]
rs2880652	1.00[ASN][1000 genomes]
rs314197	0.93[ASN][1000 genomes]
rs314200	0.93[ASN][1000 genomes]
rs314206	0.93[ASN][1000 genomes]
rs3799046	0.96[ASN][1000 genomes]
rs3799051	0.87[ASN][1000 genomes]
rs3799055	0.93[ASN][1000 genomes]
rs3799064	0.93[ASN][1000 genomes]
rs3799067	0.93[ASN][1000 genomes]
rs3799073	0.87[ASN][1000 genomes]
rs4295442	0.93[ASN][1000 genomes]
rs4295443	0.93[ASN][1000 genomes]
rs6908986	0.93[ASN][1000 genomes]
rs6926984	0.93[ASN][1000 genomes]
rs6939422	0.91[ASN][1000 genomes]
rs701654	0.93[ASN][1000 genomes]
rs7744929	0.91[ASN][1000 genomes]
rs779468	0.93[ASN][1000 genomes]
rs779471	0.91[ASN][1000 genomes]
rs779475	1.00[ASN][1000 genomes]
rs779482	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs779491	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs811405	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3410415	chr6:69865771-69866234	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69856400-69874000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69866000-69866600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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