Variant report

Variant	rs779491
Chromosome Location	chr6:69889426-69889427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69887408..69889888-chr6:69893862..69895368,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1083694	0.93[ASN][1000 genomes]
rs1283617	0.93[ASN][1000 genomes]
rs13191298	0.91[ASN][1000 genomes]
rs1321979	0.91[ASN][1000 genomes]
rs1321980	0.91[ASN][1000 genomes]
rs1407269	0.91[ASN][1000 genomes]
rs1512233	0.93[ASN][1000 genomes]
rs1751710	0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050918	0.93[ASN][1000 genomes]
rs2181002	0.91[ASN][1000 genomes]
rs2880652	1.00[ASN][1000 genomes]
rs314197	0.93[ASN][1000 genomes]
rs314200	0.93[ASN][1000 genomes]
rs314206	0.93[ASN][1000 genomes]
rs314207	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs314215	0.99[EUR][1000 genomes]
rs3799046	0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3799051	0.87[ASN][1000 genomes]
rs3799055	0.93[ASN][1000 genomes]
rs3799064	0.93[ASN][1000 genomes]
rs3799067	0.93[ASN][1000 genomes]
rs3799073	0.87[ASN][1000 genomes]
rs4295442	0.93[ASN][1000 genomes]
rs4295443	0.93[ASN][1000 genomes]
rs6908986	0.93[ASN][1000 genomes]
rs6926984	0.93[ASN][1000 genomes]
rs6939422	0.91[ASN][1000 genomes]
rs701654	0.93[ASN][1000 genomes]
rs7744929	0.91[ASN][1000 genomes]
rs779468	0.93[ASN][1000 genomes]
rs779471	0.91[ASN][1000 genomes]
rs779475	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs779480	1.00[YRI][hapmap]
rs779482	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69876800-69889800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69877000-69891000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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