Variant report

Variant	rs31439
Chromosome Location	chr14:79412386-79412387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11159385	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11159386	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11159387	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159388	0.99[ASN][1000 genomes]
rs11159389	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11159390	0.96[ASN][1000 genomes]
rs11845894	0.97[ASN][1000 genomes]
rs11847534	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11847702	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12050287	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs149088	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs154329	0.86[ASN][1000 genomes]
rs154330	0.86[ASN][1000 genomes]
rs154333	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs154334	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs154336	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs154343	0.90[ASN][1000 genomes]
rs17108401	0.92[ASN][1000 genomes]
rs17108405	0.92[ASN][1000 genomes]
rs17108413	0.90[ASN][1000 genomes]
rs17108429	0.80[ASN][1000 genomes]
rs220103	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs220104	0.84[ASN][1000 genomes]
rs2270963	0.81[ASN][1000 genomes]
rs2272292	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2272293	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs31349	0.85[ASN][1000 genomes]
rs31351	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs31352	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs31419	0.80[ASN][1000 genomes]
rs31420	0.80[ASN][1000 genomes]
rs31436	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs31437	0.99[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs31450	0.90[ASN][1000 genomes]
rs3817535	0.91[ASN][1000 genomes]
rs60746359	0.96[ASN][1000 genomes]
rs61330422	0.87[ASN][1000 genomes]
rs61995265	0.82[ASN][1000 genomes]
rs7157841	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs730024	0.80[ASN][1000 genomes]
rs8003966	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007109	0.81[ASN][1000 genomes]
rs8007461	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79412200-79412400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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