Variant report

Variant	rs8003966
Chromosome Location	chr14:79420813-79420814
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11159385	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11159386	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11159387	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11159388	0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11159389	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11159390	0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11845894	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11847534	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11847702	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12050287	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs149088	0.84[ASN][1000 genomes]
rs154329	0.87[ASN][1000 genomes]
rs154330	0.87[ASN][1000 genomes]
rs154333	0.87[ASN][1000 genomes]
rs154334	0.87[ASN][1000 genomes]
rs154336	0.87[ASN][1000 genomes]
rs154343	0.91[ASN][1000 genomes]
rs17108401	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17108405	0.91[ASN][1000 genomes]
rs17108413	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17108429	0.82[ASN][1000 genomes]
rs220103	0.86[ASN][1000 genomes]
rs220104	0.86[ASN][1000 genomes]
rs2272292	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2272293	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs31349	0.84[ASN][1000 genomes]
rs31351	0.84[ASN][1000 genomes]
rs31352	0.84[ASN][1000 genomes]
rs31415	0.81[ASN][1000 genomes]
rs31417	0.81[ASN][1000 genomes]
rs31419	0.82[ASN][1000 genomes]
rs31420	0.82[ASN][1000 genomes]
rs31436	0.91[ASN][1000 genomes]
rs31437	0.91[ASN][1000 genomes]
rs31439	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs31450	0.88[ASN][1000 genomes]
rs3817535	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs60746359	0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs61330422	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61995265	0.83[ASN][1000 genomes]
rs7157841	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs730024	0.82[ASN][1000 genomes]
rs8007109	0.88[AFR][1000 genomes]
rs8007461	0.97[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79416800-79426200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79416800-79436000	Weak transcription	Brain Inferior Temporal Lobe	brain

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