Variant report

Variant	rs220104
Chromosome Location	chr14:79392111-79392112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10873319	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11159385	0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11159386	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11159387	0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11159388	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11159389	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11159390	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11845894	0.87[ASN][1000 genomes]
rs11847534	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11847702	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12050287	0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12588364	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs149088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs150774	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs154323	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs154329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs154330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs154333	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs154334	0.97[ASN][1000 genomes]
rs154336	0.97[ASN][1000 genomes]
rs154340	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs154343	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs154376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs154378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17108397	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs17108401	0.92[ASN][1000 genomes]
rs17108405	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17108413	0.92[ASN][1000 genomes]
rs220103	1.00[ASN][1000 genomes]
rs2272292	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2272293	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs31349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs31351	0.99[ASN][1000 genomes]
rs31352	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs31420	0.84[JPT][hapmap]
rs31421	0.84[JPT][hapmap]
rs31422	0.84[JPT][hapmap]
rs31424	0.90[JPT][hapmap]
rs31426	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs31436	0.96[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs31437	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs31439	0.84[ASN][1000 genomes]
rs31441	0.83[CHB][hapmap]
rs31448	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs31450	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3817535	0.93[ASN][1000 genomes]
rs60746359	0.84[ASN][1000 genomes]
rs61330422	0.97[ASN][1000 genomes]
rs7142134	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs7157841	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs8003966	0.86[ASN][1000 genomes]
rs8007109	0.82[ASN][1000 genomes]
rs8007461	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs8011529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3395276	chr14:79392024-79394572	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79391800-79392600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:79391800-79392600	Enhancers	Brain Germinal Matrix	brain
3	chr14:79392000-79392200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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