Variant report

Variant	rs8011529
Chromosome Location	chr14:79376679-79376680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10873319	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs11159385	0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11159386	0.86[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11159387	0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11159388	0.82[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11159389	0.82[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11159390	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs11845894	0.84[ASN][1000 genomes]
rs11847534	0.82[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11847702	0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12050287	0.82[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12588364	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs149088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs150774	0.96[CHB][hapmap];0.89[JPT][hapmap]
rs154323	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs154324	0.85[YRI][hapmap]
rs154329	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs154330	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs154333	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs154334	0.94[ASN][1000 genomes]
rs154336	0.94[ASN][1000 genomes]
rs154340	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs154343	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs154376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs154378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17108397	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs17108401	0.88[ASN][1000 genomes]
rs17108405	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs17108413	0.88[ASN][1000 genomes]
rs220103	0.95[ASN][1000 genomes]
rs220104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2272292	0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2272293	0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs31349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs31351	0.94[ASN][1000 genomes]
rs31352	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs31424	0.84[JPT][hapmap]
rs31426	0.86[CHB][hapmap]
rs31436	0.96[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs31437	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs31439	0.81[ASN][1000 genomes]
rs31441	0.83[CHB][hapmap]
rs31448	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs31450	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs3817535	0.90[ASN][1000 genomes]
rs60746359	0.81[ASN][1000 genomes]
rs61330422	0.92[ASN][1000 genomes]
rs7142134	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs7157841	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs8003966	0.82[ASN][1000 genomes]
rs8007461	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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