Variant report
| Variant | rs31442 |
|---|---|
| Chromosome Location | chr14:79411113-79411114 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10136690 | 1.00[EUR][1000 genomes] |
| rs10140529 | 1.00[EUR][1000 genomes] |
| rs10145952 | 1.00[EUR][1000 genomes] |
| rs11851757 | 1.00[MEX][hapmap] |
| rs150775 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap] |
| rs154322 | 1.00[MEX][hapmap] |
| rs154326 | 1.00[YRI][hapmap] |
| rs17094087 | 1.00[EUR][1000 genomes] |
| rs17108387 | 1.00[EUR][1000 genomes] |
| rs17108455 | 1.00[EUR][1000 genomes] |
| rs17108499 | 1.00[EUR][1000 genomes] |
| rs28619030 | 1.00[EUR][1000 genomes] |
| rs31416 | 1.00[MEX][hapmap] |
| rs31444 | 1.00[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap] |
| rs31451 | 1.00[ASW][hapmap];0.94[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs57057681 | 1.00[EUR][1000 genomes] |
| rs61291300 | 1.00[EUR][1000 genomes] |
| rs7158612 | 1.00[EUR][1000 genomes] |
| rs73317254 | 1.00[EUR][1000 genomes] |
| rs73317257 | 1.00[EUR][1000 genomes] |
| rs73317263 | 1.00[EUR][1000 genomes] |
| rs73320804 | 1.00[EUR][1000 genomes] |
| rs73320805 | 1.00[EUR][1000 genomes] |
| rs73321613 | 1.00[EUR][1000 genomes] |
| rs73321687 | 1.00[EUR][1000 genomes] |
| rs73325334 | 1.00[EUR][1000 genomes] |
| rs73332961 | 1.00[EUR][1000 genomes] |
| rs8005448 | 1.00[EUR][1000 genomes] |
| rs8005492 | 1.00[EUR][1000 genomes] |
| rs8011912 | 1.00[EUR][1000 genomes] |
| rs8011993 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832838 | chr14:79306627-79445382 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv1048274 | chr14:79323592-79417906 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv917249 | chr14:79388181-79574717 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1041991 | chr14:79394408-79644886 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
