The 2.0 version of rSNPBase

Variant report

Variant rs315549
Chromosome Location chr1:84829756-84829757
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84814200-84831400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:84825600-84829800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:84828200-84829800 Enhancers Brain Inferior Temporal Lobe brain
4 chr1:84828400-84830800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:84828400-84830800 Weak transcription HMEC breast
6 chr1:84828400-84831600 Weak transcription Psoas Muscle Psoas
7 chr1:84828400-84831600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:84828400-84836400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:84828800-84829800 Enhancers Brain Angular Gyrus brain
10 chr1:84828800-84829800 Enhancers Brain Cingulate Gyrus brain
11 chr1:84828800-84830800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:84829000-84830800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:84829000-84830800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:84829000-84830800 Weak transcription HSMM muscle
15 chr1:84829000-84831400 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:84829000-84831600 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:84829200-84829800 Enhancers Brain Substantia Nigra brain
18 chr1:84829200-84830200 Weak transcription HUVEC blood vessel
19 chr1:84829200-84830800 Weak transcription NHDF-Ad bronchial
20 chr1:84829200-84830800 Weak transcription NHLF lung
21 chr1:84829200-84830800 Weak transcription Osteobl bone
22 chr1:84829200-84831000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:84829200-84831000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:84829200-84831400 Weak transcription HSMMtube muscle
25 chr1:84829200-84832400 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:84829400-84830000 Enhancers Pancreatic Islets Pancreatic Islet
27 chr1:84829400-84830400 Weak transcription NHEK skin
28 chr1:84829400-84831000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:84829600-84829800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:84829600-84830800 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:84829600-84831000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015