The 2.0 version of rSNPBase

Variant report

Variant rs315554
Chromosome Location chr1:84792797-84792798
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84785800-84797800 Weak transcription Gastric stomach
2 chr1:84786600-84801600 Weak transcription Rectal Smooth Muscle rectum
3 chr1:84787600-84793800 Weak transcription Fetal Muscle Trunk muscle
4 chr1:84787600-84796000 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr1:84789000-84795200 Weak transcription Aorta Aorta
6 chr1:84789600-84795400 Weak transcription Brain Angular Gyrus brain
7 chr1:84789800-84797200 Weak transcription Fetal Stomach stomach
8 chr1:84790000-84793200 Weak transcription Duodenum Mucosa Duodenum
9 chr1:84790200-84795400 Weak transcription Brain Cingulate Gyrus brain
10 chr1:84790600-84792800 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:84790600-84795800 Strong transcription Rectal Mucosa Donor 31 rectum
12 chr1:84790800-84796400 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:84791200-84792800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:84791200-84793000 Strong transcription Cortex derived primary cultured neurospheres brain
15 chr1:84791200-84793200 Strong transcription Brain Hippocampus Middle brain
16 chr1:84791200-84794800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:84791200-84794800 Weak transcription Pancreas Pancrea
18 chr1:84791200-84795800 Strong transcription Rectal Mucosa Donor 29 rectum
19 chr1:84791400-84793000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:84791600-84792800 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:84791600-84793200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:84791600-84794600 Strong transcription Primary hematopoietic stem cells blood
23 chr1:84791800-84793600 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr1:84792000-84794000 Weak transcription Colonic Mucosa Colon
25 chr1:84792200-84795200 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:84792200-84795600 Weak transcription Brain Substantia Nigra brain
27 chr1:84792200-84797800 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:84792400-84793200 Enhancers Fetal Intestine Small intestine
29 chr1:84792400-84795400 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:84792400-84795800 Weak transcription Primary T cells from cord blood blood
31 chr1:84792400-84797200 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015