Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96425190..96428341-chr5:96429686..96433552,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10043135	0.81[CEU][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap]
rs11958159	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13154242	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13167931	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13173677	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs172723	0.84[ASN][1000 genomes]
rs182625	0.87[AMR][1000 genomes]
rs186414	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs316179	0.84[ASN][1000 genomes]
rs316181	0.84[ASN][1000 genomes]
rs316182	0.86[ASN][1000 genomes]
rs316187	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs316188	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs316189	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs316202	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs316206	0.80[CHD][hapmap]
rs316208	0.85[CHD][hapmap]
rs316211	0.85[CHD][hapmap]
rs316216	0.84[ASN][1000 genomes]
rs316220	0.85[CEU][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs316221	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs316225	0.81[ASN][1000 genomes]
rs316233	0.85[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes]
rs316234	0.81[CEU][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs7704410	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv969966	chr5:96418895-96427787	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96422600-96426400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr5:96423200-96430200	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:96424200-96425800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:96424800-96427000	Flanking Active TSS	K562	blood
5	chr5:96425200-96426200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:96425200-96437000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:96425400-96425600	Genic enhancers	Primary B cells from cord blood	blood
8	chr5:96425400-96425600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:96425400-96426600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:96425400-96428200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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