Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11739416	0.84[ASN][1000 genomes]
rs11739448	0.84[ASN][1000 genomes]
rs11749186	0.84[ASN][1000 genomes]
rs11958159	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs13154242	0.90[ASN][1000 genomes]
rs13167931	0.91[ASN][1000 genomes]
rs13173677	0.91[ASN][1000 genomes]
rs172723	0.88[ASN][1000 genomes]
rs172725	0.81[ASN][1000 genomes]
rs186414	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs221970	0.87[ASN][1000 genomes]
rs316179	0.88[ASN][1000 genomes]
rs316181	0.88[ASN][1000 genomes]
rs316182	0.90[ASN][1000 genomes]
rs316187	0.95[ASN][1000 genomes]
rs316188	0.95[ASN][1000 genomes]
rs316189	0.95[ASN][1000 genomes]
rs316202	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs316208	0.84[JPT][hapmap]
rs316211	0.84[JPT][hapmap]
rs316216	0.88[ASN][1000 genomes]
rs316220	0.90[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs316222	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs316225	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs316226	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs316227	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs316228	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7704410	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv969966	chr5:96418895-96427787	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96422600-96425400	Strong transcription	Primary B cells from cord blood	blood
2	chr5:96422600-96426400	Strong transcription	Primary B cells from peripheral blood	blood
3	chr5:96423200-96430200	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:96424200-96425800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:96424800-96425400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr5:96424800-96427000	Flanking Active TSS	K562	blood
7	chr5:96425000-96425200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:96425000-96425200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:96425000-96425400	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:96425000-96425400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:96425000-96425400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

Quick Search: