Variant report

Variant	rs11749186
Chromosome Location	chr5:96411443-96411444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10463198	0.81[CHB][hapmap]
rs11739416	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739448	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958159	0.89[CHD][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.84[ASN][1000 genomes]
rs13154242	0.83[ASN][1000 genomes]
rs13167931	0.84[ASN][1000 genomes]
rs13173677	0.84[ASN][1000 genomes]
rs172723	0.81[ASN][1000 genomes]
rs172724	0.81[ASN][1000 genomes]
rs172725	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs186414	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs221970	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544775	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316181	0.81[ASN][1000 genomes]
rs316187	0.85[ASN][1000 genomes]
rs316188	0.85[ASN][1000 genomes]
rs316189	0.85[ASN][1000 genomes]
rs316206	0.88[JPT][hapmap]
rs316208	0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs316211	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs316213	0.81[CHB][hapmap]
rs316216	0.81[ASN][1000 genomes]
rs316220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316221	0.84[ASN][1000 genomes]
rs316223	0.90[AMR][1000 genomes]
rs316225	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316226	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316227	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316228	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs421173	0.81[ASN][1000 genomes]
rs445037	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96410200-96411600	Enhancers	K562	blood
2	chr5:96410600-96411800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr5:96411000-96411600	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr5:96411000-96411600	Enhancers	A549	lung
5	chr5:96411000-96414200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:96411000-96414600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:96411200-96411800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:96411200-96412000	Enhancers	Primary B cells from peripheral blood	blood
9	chr5:96411400-96412000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:96411400-96417600	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links