Variant report

Variant	rs421173
Chromosome Location	chr5:96391590-96391591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10463198	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs11739416	0.81[ASN][1000 genomes]
rs11739448	0.81[ASN][1000 genomes]
rs11740941	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11749186	0.81[ASN][1000 genomes]
rs11750003	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11958159	0.82[JPT][hapmap]
rs12109525	0.98[ASN][1000 genomes]
rs13161540	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13165925	0.81[EUR][1000 genomes]
rs13175726	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs172724	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186414	0.81[ASN][1000 genomes]
rs221970	0.85[ASN][1000 genomes]
rs2544775	0.82[ASN][1000 genomes]
rs316202	0.80[CHB][hapmap]
rs316206	0.85[CEU][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs316207	0.84[CEU][hapmap]
rs316208	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs316209	0.84[CEU][hapmap]
rs316211	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs316212	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs316213	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs316220	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs316225	0.81[ASN][1000 genomes]
rs316226	0.83[ASN][1000 genomes]
rs316227	0.83[ASN][1000 genomes]
rs316228	0.83[ASN][1000 genomes]
rs445037	1.00[ASN][1000 genomes]
rs7706943	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7720969	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv968220	chr5:96387064-96392806	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96386800-96397800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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