Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11739416	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11739448	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11740941	0.80[ASN][1000 genomes]
rs11749186	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11750003	0.80[ASN][1000 genomes]
rs12109525	0.80[ASN][1000 genomes]
rs13175726	0.80[ASN][1000 genomes]
rs172724	0.82[ASN][1000 genomes]
rs172725	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs186414	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs221970	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs316187	0.80[ASN][1000 genomes]
rs316188	0.80[ASN][1000 genomes]
rs316189	0.80[ASN][1000 genomes]
rs316220	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs316225	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs316226	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs316227	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs316228	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs421173	0.82[ASN][1000 genomes]
rs445037	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96403400-96411200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:96409000-96410800	Flanking Active TSS	Primary B cells from peripheral blood	blood
3	chr5:96409200-96410400	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr5:96409200-96410800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:96409400-96409800	Enhancers	Monocytes-CD14+_RO01746	blood

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