Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96414990..96416706-chr5:96466146..96468878,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11739416	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11739448	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11749186	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958159	0.83[ASN][1000 genomes]
rs13154242	0.83[ASN][1000 genomes]
rs13167931	0.83[ASN][1000 genomes]
rs13173677	0.83[ASN][1000 genomes]
rs172723	0.81[ASN][1000 genomes]
rs172724	0.81[ASN][1000 genomes]
rs172725	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs221970	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544775	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs316179	0.81[ASN][1000 genomes]
rs316181	0.81[ASN][1000 genomes]
rs316182	0.82[ASN][1000 genomes]
rs316187	0.84[ASN][1000 genomes]
rs316188	0.84[ASN][1000 genomes]
rs316189	0.84[ASN][1000 genomes]
rs316216	0.81[ASN][1000 genomes]
rs316220	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs316221	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs316222	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs316225	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316226	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs316227	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs316228	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421173	0.81[ASN][1000 genomes]
rs445037	0.81[ASN][1000 genomes]
rs7704410	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96411400-96417600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:96414000-96416000	Enhancers	Primary B cells from cord blood	blood
3	chr5:96414200-96417400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:96414600-96417000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:96414600-96421400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:96415400-96417600	Weak transcription	GM12878-XiMat	blood
7	chr5:96415400-96422800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:96415600-96417600	Weak transcription	Primary B cells from peripheral blood	blood

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