Variant report

Variant	rs318084
Chromosome Location	chr5:41462994-41462995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11746987	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs13174932	0.88[EUR][1000 genomes]
rs1457131	0.80[EUR][1000 genomes]
rs191162	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs318040	0.87[EUR][1000 genomes]
rs318042	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs318043	0.86[EUR][1000 genomes]
rs318044	1.00[CEU][hapmap]
rs318045	1.00[CEU][hapmap]
rs318081	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318086	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318087	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35350798	0.87[EUR][1000 genomes]
rs3851439	0.85[CEU][hapmap]
rs4346812	1.00[CEU][hapmap]
rs4957155	1.00[CEU][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41456200-41466600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:41460800-41463200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:41462200-41463600	Enhancers	Fetal Heart	heart
5	chr5:41462200-41475000	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links