Variant report

Variant	rs11746987
Chromosome Location	chr5:41485610-41485611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11746598	0.81[AFR][1000 genomes]
rs13174932	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1457131	0.86[AFR][1000 genomes]
rs191162	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs318022	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318040	0.93[EUR][1000 genomes]
rs318042	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs318043	0.92[EUR][1000 genomes]
rs318044	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318045	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318046	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318047	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318050	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs318051	0.83[AMR][1000 genomes]
rs318081	0.94[CEU][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs318084	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs318086	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs318087	0.94[CEU][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs35350798	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3851439	0.81[CEU][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3907521	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3913721	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4245981	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4315963	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4346812	0.94[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4957155	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62360431	0.84[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11746987	NNT	cis	cerebellum	SCAN
rs11746987	C5orf28	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41484600-41487600	Enhancers	Fetal Heart	heart
3	chr5:41485600-41486000	Enhancers	Right Atrium	heart
4	chr5:41485600-41486200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:41485600-41486800	Enhancers	Left Ventricle	heart

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