Variant report

Variant	rs4245981
Chromosome Location	chr5:41523978-41523979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11746987	0.94[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13174932	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs191162	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs318022	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs318040	0.91[EUR][1000 genomes]
rs318042	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs318043	0.90[EUR][1000 genomes]
rs318044	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318045	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318046	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318047	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318050	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs318051	0.83[AMR][1000 genomes]
rs318081	1.00[CEU][hapmap];0.89[GIH][hapmap];0.85[LWK][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs318084	1.00[CEU][hapmap]
rs318086	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs318087	1.00[CEU][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs35350798	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3851439	0.88[CEU][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3907521	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3913721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4315963	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4346812	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4957155	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4245981	C5orf28	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41523000-41524000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:41523000-41524200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:41523200-41524200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:41523400-41527800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:41523800-41526600	Enhancers	Fetal Heart	heart

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