Variant report

Variant	rs3213460
Chromosome Location	chr11:102668882-102668883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10466640	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1051121	1.00[CHB][hapmap]
rs11225429	1.00[CHB][hapmap]
rs11600510	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604098	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277638	1.00[CHB][hapmap]
rs12789483	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12801466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17293348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17293607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17293642	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17293823	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17860953	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17860967	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17860975	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17860979	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17860992	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17861014	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17861016	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17878931	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17885563	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17885595	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3025090	1.00[CHB][hapmap]
rs34686002	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3819099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57701631	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102665200-102669400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:102665400-102672000	Weak transcription	Fetal Stomach	stomach
3	chr11:102667600-102671200	Enhancers	Fetal Intestine Small	intestine
4	chr11:102667800-102671000	Enhancers	Stomach Mucosa	stomach
5	chr11:102668000-102670000	Enhancers	Lung	lung
6	chr11:102668000-102670400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:102668000-102670800	Enhancers	Fetal Intestine Large	intestine
8	chr11:102668200-102670200	Weak transcription	Small Intestine	intestine
9	chr11:102668200-102674800	Enhancers	NHDF-Ad	bronchial
10	chr11:102668400-102669600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:102668400-102669600	Enhancers	HMEC	breast
12	chr11:102668400-102669600	Enhancers	NHLF	lung
13	chr11:102668600-102669000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:102668600-102669000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:102668600-102669000	Flanking Active TSS	HUVEC	blood vessel
16	chr11:102668600-102669200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:102668600-102669400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:102668600-102669400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:102668600-102669400	Enhancers	NH-A	brain
20	chr11:102668600-102669600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:102668600-102669600	Enhancers	NHEK	skin
22	chr11:102668800-102669000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:102668800-102669200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:102668800-102669200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:102668800-102669200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr11:102668800-102669400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:102668800-102669400	Enhancers	HSMMtube	muscle
28	chr11:102668800-102669400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links