Variant report

Variant	rs12277638
Chromosome Location	chr11:102701225-102701226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:102701129-102701278	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr11:102701135-102701362	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr11:102701133-102701389	MCF10A-Er-Src	breast:	n/a	chr11:102701305-102701313 chr11:102701304-102701314 chr11:102701304-102701314 chr11:102701306-102701317 chr11:102701304-102701314 chr11:102701303-102701315 chr11:102701304-102701314

Variant related genes	Relation type
WTAPP1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1034374	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034375	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1051121	1.00[CHB][hapmap]
rs11225429	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11225439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284928	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289128	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801466	1.00[CHB][hapmap]
rs17293348	1.00[CHB][hapmap]
rs17293607	1.00[CHB][hapmap]
rs17293642	1.00[CHB][hapmap]
rs17293823	1.00[CHB][hapmap]
rs2276108	1.00[CHB][hapmap]
rs3025067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3025090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213460	1.00[CHB][hapmap]
rs3819099	1.00[CHB][hapmap]
rs41380244	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58264782	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117506	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102697200-102701400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:102700000-102701400	Enhancers	HMEC	breast
3	chr11:102700000-102701600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:102700000-102702200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:102700000-102702200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:102700200-102701400	Enhancers	NHDF-Ad	bronchial
7	chr11:102700200-102701600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:102700600-102701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:102700600-102701400	Weak transcription	Placenta	Placenta
10	chr11:102700600-102702400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:102700600-102702600	Weak transcription	Right Atrium	heart
12	chr11:102700600-102707200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:102700800-102701600	Enhancers	Stomach Mucosa	stomach
14	chr11:102700800-102701600	Enhancers	NH-A	brain
15	chr11:102700800-102704200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:102701000-102701600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:102701000-102701800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:102701000-102702200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:102701000-102702200	Weak transcription	Adipose Nuclei	Adipose
20	chr11:102701200-102701400	Enhancers	Osteobl	bone
21	chr11:102701200-102701800	Enhancers	NHEK	skin
22	chr11:102701200-102706600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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